API to access CancerModels.Org data.
\nPatient-derived cancer models (PDCMs) are a powerful oncology research platform for studying tumour biology, mechanisms of drug response and resistance and for testing personalised medicine. Distributed nature of repositories for PDCMs (xenografts, organoids and cell lines) and the use of different metadata standards for describing model''s characteristics make it difficult for researchers to identify suitable PDCM models relevant to specific cancer research questions.
\nCancerModels.Org aims to solve this problem by providing harmonized and integrated model attributes to support consistent searching across the originating resources.
\nWe use PostgREST to automatically create endpoints from a set of views that define our public API. The resulting endpoints expect a set of operators when using them. These table shows some of them:
\nA complete table and additional documentation about how to use PostgREST can be found here.
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\n","type":"text/plain"},"key":"model_id","value":"eq.TM01002"},{"description":{"content":"Data source of the model (provider abbreviation)
\n","type":"text/plain"},"key":"data_source","value":"eq.JAX"},{"description":{"content":"Provider full name
\n","type":"text/plain"},"key":"provider_name","value":"eq.The Jackson laboratory"},{"description":{"content":"Model type (xenograft, cell_line, …)
\n","type":"text/plain"},"key":"type","value":"eq.xenograft"},{"description":{"content":"Host mouse strain name (e.g. NOD-SCID, NSG, etc)
\n","type":"text/plain"},"key":"host_strain_name","value":"eq.nsg"},{"description":{"content":"The full nomenclature form of the host mouse strain name
\n","type":"text/plain"},"key":"host_strain_nomenclature","value":"eq.NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ"},{"description":{"content":"Organ or anatomical site used for the tumour engraftment (e.g. mammary fat pad, Right flank)
\n","type":"text/plain"},"key":"engraftment_site","value":"eq.Not Provided"},{"description":{"content":"Orthotopic: if the tumour was engrafted at a corresponding anatomical site. Hererotopic: If grafted subcuteanously
\n","type":"text/plain"},"key":"engraftment_type","value":"eq.Heterotopic"},{"description":{"content":"Description of the type of material grafted into the mouse. (e.g. tissue fragments, cell suspension)
\n","type":"text/plain"},"key":"engraftment_sample_type","value":"eq.Surgical Resection (fragment)"},{"description":{"content":"PDX Engraftment material state (e.g. fresh or frozen)
\n","type":"text/plain"},"key":"engraftment_sample_state","value":"eq.Not Provided"},{"description":{"content":"Passage number
\n","type":"text/plain"},"key":"passage_number","value":"eq.1"},{"description":{"content":"Diagnosis at time of collection of the patient tumor
\n","type":"text/plain"},"key":"histology","value":"eq.Bladder Papillary Urothelial Carcinoma"},{"description":{"content":"Cancer System
\n","type":"text/plain"},"key":"cancer_system","value":"eq.Urinary System Cancer"},{"description":{"content":"Site of the primary tumor where primary cancer is originating from (may not correspond to the site of the current tissue sample)
\n","type":"text/plain"},"key":"primary_site","value":"eq.bladder"},{"description":{"content":"Site of collection of the tissue sample (can be different than the primary site if tumour type is metastatic)
\n","type":"text/plain"},"key":"collection_site","value":"eq.bladder"},{"description":{"content":"Collected tumor type
\n","type":"text/plain"},"key":"tumor_type","value":"eq.Primary"},{"description":{"content":"The implanted tumor grade value
\n","type":"text/plain"},"key":"cancer_grade","value":"eq.Grade:low"},{"description":{"content":"Stage classification system used to describe the stage
\n","type":"text/plain"},"key":"cancer_grading_system","value":"eq.AJCC"},{"description":{"content":"Stage of the patient at the time of collection
\n","type":"text/plain"},"key":"cancer_stage","value":"eq.AJCC 0 - in situ"},{"description":{"content":"Patient age at collection
\n","type":"text/plain"},"key":"patient_age","value":"eq.Not specified"},{"description":{"content":"Sex of the patient
\n","type":"text/plain"},"key":"patient_sex","value":"eq.male"},{"description":{"content":"Patient Ethnic group
\n","type":"text/plain"},"key":"patient_ethnicity","value":"eq.Not Collected"},{"description":{"content":"Patient treatment status
\n","type":"text/plain"},"key":"patient_treatment_status","value":"eq.Not specified"},{"description":{"content":"PubMed ids related to the model
\n","type":"text/plain"},"key":"pubmed_ids","value":"eq.PMID: 26270481"},{"description":{"content":"If a model is part of EUROPDX consortium, then this field defines if the model is accessible for transnational access through the EDIReX infrastructure, or only on a collaborative basis
\n","type":"text/plain"},"key":"europdx_access_modalities","value":"eq.Not Applicable"},{"description":{"content":"Defines any limitation of access of the model per type of users like academia only, industry and academia, or national limitation
\n","type":"text/plain"},"key":"accessibility","value":"eq.Academia and Industry"},{"description":{"content":"List of names of the contact people for the model
\n","type":"text/plain"},"key":"contact_name_list","value":"eq.micetech"},{"description":{"content":"Emails of the contact names for the model
\n","type":"text/plain"},"key":"contact_email_list","value":"eq.micetech@jax.org"},{"description":{"content":"URL to the providers resource for each model
\n","type":"text/plain"},"key":"contact_form_url","value":"eq.http://tumor.informatics.jax.org/mtbwi/pdxRequest.do?mice=TM01002"},{"description":{"content":"URL to the source database for each model
\n","type":"text/plain"},"key":"source_database_url","value":"eq.http://tumor.informatics.jax.org/mtbwi/pdxDetails.do?modelID=TM01002"},{"description":{"content":"Filtering Columns
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\n","type":"text/plain"},"key":"validation_host_strain_nomenclature","value":"eq.NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ"},{"description":{"content":"Filtering Columns
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